Automate launching Sage notebook with mamba in WSL
 
  
 
  
 
 
 
 
 
 
    
        
        asked 1 year ago  
 
 Road gravatar image  
 
 
 
 
    
        
        updated 1 year ago  
 
 
 
 
 
In WSL (Ubuntu), I have created a shell script ~/sage_nb.sh:
 
mamba activate sageforge
cd /mnt/g/<somepath>
sage -n jupyter --NotebookApp.use_redirect_file=False
 
However, simply running the script via the command ~/sage_nb.sh results in errors:
 
 
Run 'mamba init' to be able to run mamba activate/deactivate and st art a new shell session. Or use conda to activate/deactivate.
 
 
I found out that running source ~/sage_nb.sh would work. However, this assumes that I manually launch ubuntu WSL and then run source ~/sage_nb.sh. I would like to automate this entire process. 
 
Creating and running a Window batch script with the command ubuntu run "source ~/sage_nb.sh" results in error:
 
 
mamba: command not found
 
 
I believe this is because mamba needs some preprocessing that is usually done by launching ubuntu manually.
 
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Comments
Try using a login shell, i.e. adding #!/bin/bash --login at the top of your shell script.
rburing gravatar imagerburing (
    
        1 year ago
    )
This doesn't work. ubuntu run "source ~/sage_nb.sh" and "ubuntu run ~/sage_nb.sh" still result in mamba: command not found and sage: command not found.
Road gravatar imageRoad (
    
        1 year ago
    )
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