Call pure python code from SAGE

asked 2012-04-30 12:23:18 +0200

kankamuso
13 ●1 ●1 ●5

updated 2012-05-09 18:46:49 +0200

Dear all,

I want to move from matlab for my image processing tasks. Nevertheless, to load the file formats I use (SPIDER, MRC, etc..), I only have some python code. Is it possible to directly invoke such python code from SAGE?. If so.. how? (I have looked for a Python inteface, but no luck for SAGE invoking Python). If not.. what is the recommended workflow to program and publish my codes for the community?.

Thanks in advance!

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Short answer is yes. Are you looking for this in the notebook or command line?

kcrisman ( 2012-04-30 13:45:03 +0200 )edit

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answered 2012-04-30 19:41:01 +0200

Jason Grout
3505 ●9 ●36 ●81

Here are at least 3 ways:

Run the code with sage -python filename.py
In the notebook, choose "python" in the dropdown list at the top.
In the notebook, put the code in a cell with a %python at the top of the cell.

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What about some pure python in the interpreter? i'm using sage interpreter in emacs...

alejandroerickson ( 2012-05-01 01:22:51 +0200 )edit

The main difference is the preparser. You can turn off the preparser with `preparser(False)`. But I should also say---have you tried just running your code? Most python code runs just fine directly in Sage, even with the preparser on.

Jason Grout ( 2012-05-10 23:27:08 +0200 )edit

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