Add R package in Sage folder

edit

Ha! Because Niles isn't really familiar with R -- sorry for the confusion.

This definitely should work. I'm putting yet another way of thinking of this below.

OK after reinstalling using sage -f r this works for 1. sage -sh 2. sage - R 3. install.packages('orloca'). Thanks for all the help.

This almost works but has not installed anything correctly yet. I have tried orloca, ggplot2, and maptools so far. I will put a big list of output below just FYI. Systems info: Sage 4.7, ubuntu lucid. Other aspects of SAGE are working fine for me.

This is some output FYI. matthew@matthew-laptop:~$ sage -R Error in if (file.info(codeFile)["size"] == file.info(loaderFile)["size"]) warning("package seems to be using lazy loading already") else { : missing value where TRUE/FALSE needed ERROR: lazy loading failed for package ‘proto’ * removing ‘/opt/sage-4.8-linux-32bit-ubuntu_10.04_lts-i686-Linux/local/lib/R/library/proto’ ERROR: dependency ‘plyr’ is not available for package ‘stringr’ * removing ‘/opt/sage-4.8-linux-32bit-ubuntu_10.04_lts-i686-Linux/local/lib/R/library/stringr’ ERROR: dependency ‘colorspace’ is not available for package ‘munsell’ * removing ‘/opt/sage-4.8-linux-32bit-ubuntu_10.04_lts-i686-Linux/local/lib/R/library/munsell’ ERROR: dependency ‘digest’ is not available for package ‘memoise’ * removing ‘/opt/sage-4.8-li

for maptools error looks like thismake: /home/wstein/build/sage-4.8/local/lib/R/share/make/shlib.mk: No such file or directory make: *** No rule to make target `/home/wstein/build/sage-4.8/local/lib/R/share/make/shlib.mk'. Stop. ERROR: compilation failed for package ‘sp’ * removing ‘/opt/sage-4.8-linux-32bit-ubuntu_10.04_lts-i686-Linux/local/lib/R/library/sp’ ERROR: dependency ‘sp’ is not available for package ‘maptools’ * removing ‘/opt/sage-4.8-linux-32bit-ubuntu_10.04_lts-i686-Linux/local/lib/R/library/maptools’ The downloaded packages are in ‘/tmp/RtmpzrpYpN/downloaded_packages’ Warning messages: 1: In install.packages("maptools") : installation of package ‘sp’ had non-zero exit status 2: In install.packages("maptools") : installation of package ‘maptools’ had non-zero exit stat

Hmm, that is puzzling. What happens if you use the "within Sage" option? I think that at least part of the problem is that there are some "hardcoded" parts - see the `wstein` bits, that shouldn't be there. If it persists, I would try doing `sage -f r`, assuming you have the right dependencies like fortran on your system, and then doing all of this again.

Or you could just build Sage from scratch :)