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asked 2012-05-26 14:55:08 +0100

bk322 gravatar image

Sage uses system-wide python...

I've just compiled the latest sage, it tries to import my system-wide ipython instead of its own - and won't run:

./sage
----------------------------------------------------------------------
| Sage Version 5.0, Release Date: 2012-05-14                         |
| Type notebook() for the GUI, and license() for information.        |
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/boris/its/soft/sft/sage-5.0-x86_64/local/bin/sage-ipython", line 18, in <module>
    import IPython
  File "/usr/lib/python2.7/dist-packages/IPython/__init__.py", line 46, in <module>
    from .frontend.terminal.embed import embed
  File "/usr/lib/python2.7/dist-packages/IPython/frontend/terminal/embed.py", line 37, in <module>
    from IPython.frontend.terminal.ipapp import load_default_config
  File "/usr/lib/python2.7/dist-packages/IPython/frontend/terminal/ipapp.py", line 38, in <module>
    from IPython.core.completer import IPCompleter
  File "/usr/lib/python2.7/dist-packages/IPython/core/completer.py", line 84, in <module>
    from IPython.utils import generics
  File "/usr/lib/python2.7/dist-packages/IPython/utils/generics.py", line 19, in <module>
    from IPython.external.simplegeneric import generic
  File "/usr/lib/python2.7/dist-packages/IPython/external/simplegeneric/__init__.py", line 4, in <module>
    from _simplegeneric import *
ImportError: No module named _simplegeneric

Sage uses system-wide python...

I've just compiled the latest sage, it tries to import my system-wide ipython instead of its own - and won't run:

./sage
----------------------------------------------------------------------
| Sage Version 5.0, Release Date: 2012-05-14                         |
| Type notebook() for the GUI, and license() for information.        |
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/boris/its/soft/sft/sage-5.0-x86_64/local/bin/sage-ipython", line 18, in <module>
    import IPython
  File "/usr/lib/python2.7/dist-packages/IPython/__init__.py", line 46, in <module>
    from .frontend.terminal.embed import embed
  File "/usr/lib/python2.7/dist-packages/IPython/frontend/terminal/embed.py", line 37, in <module>
    from IPython.frontend.terminal.ipapp import load_default_config
  File "/usr/lib/python2.7/dist-packages/IPython/frontend/terminal/ipapp.py", line 38, in <module>
    from IPython.core.completer import IPCompleter
  File "/usr/lib/python2.7/dist-packages/IPython/core/completer.py", line 84, in <module>
    from IPython.utils import generics
  File "/usr/lib/python2.7/dist-packages/IPython/utils/generics.py", line 19, in <module>
    from IPython.external.simplegeneric import generic
  File "/usr/lib/python2.7/dist-packages/IPython/external/simplegeneric/__init__.py", line 4, in <module>
    from _simplegeneric import *
ImportError: No module named _simplegeneric

Edit:

I purged my ~/.config/ipython as well as ~/.sage. No help. I tried to load sage's ipython manually:

import imp
IPython = imp.load_source('IPython', os.environ['SAGE_ROOT']+'/local/lib/python2.7/site-packages/IPython/__init__.py')

then sage gives another error:

/home/boris/its/soft/sft/sage-5.0-x86_64
Traceback (most recent call last):
  File "/home/boris/its/soft/sft/sage-5.0-x86_64/local/bin/sage-ipython", line 21, in <module>
    IPython = imp.load_source('IPython', os.environ['SAGE_ROOT']+'/local/lib/python2.7/site-packages/IPython/__init__.py')
  File "/home/boris/its/soft/sft/sage-5.0-x86_64/local/lib/python2.7/site-packages/IPython/__init__.py", line 58, in <module>
    __import__(name,glob,loc,[])
ImportError: No module named ipapi

Sage uses system-wide python...

I've just compiled the latest sage, it tries to import my system-wide ipython instead of its own - and won't run:

./sage
----------------------------------------------------------------------
| Sage Version 5.0, Release Date: 2012-05-14                         |
| Type notebook() for the GUI, and license() for information.        |
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/boris/its/soft/sft/sage-5.0-x86_64/local/bin/sage-ipython", line 18, in <module>
    import IPython
  File "/usr/lib/python2.7/dist-packages/IPython/__init__.py", line 46, in <module>
    from .frontend.terminal.embed import embed
  File "/usr/lib/python2.7/dist-packages/IPython/frontend/terminal/embed.py", line 37, in <module>
    from IPython.frontend.terminal.ipapp import load_default_config
  File "/usr/lib/python2.7/dist-packages/IPython/frontend/terminal/ipapp.py", line 38, in <module>
    from IPython.core.completer import IPCompleter
  File "/usr/lib/python2.7/dist-packages/IPython/core/completer.py", line 84, in <module>
    from IPython.utils import generics
  File "/usr/lib/python2.7/dist-packages/IPython/utils/generics.py", line 19, in <module>
    from IPython.external.simplegeneric import generic
  File "/usr/lib/python2.7/dist-packages/IPython/external/simplegeneric/__init__.py", line 4, in <module>
    from _simplegeneric import *
ImportError: No module named _simplegeneric

Edit:

I purged my ~/.config/ipython as well as ~/.sage. No help. I tried to load sage's ipython manually:

import imp
IPython = imp.load_source('IPython', imp.imp.load_source('IPython', os.environ['SAGE_ROOT']+'/local/lib/python2.7/site-packages/IPython/__init__.py')

then sage Now it gives another error:

/home/boris/its/soft/sft/sage-5.0-x86_64
Traceback (most recent call last):
  File "/home/boris/its/soft/sft/sage-5.0-x86_64/local/bin/sage-ipython", line 21, in <module>
    IPython = imp.load_source('IPython', os.environ['SAGE_ROOT']+'/local/lib/python2.7/site-packages/IPython/__init__.py')
  File "/home/boris/its/soft/sft/sage-5.0-x86_64/local/lib/python2.7/site-packages/IPython/__init__.py", line 58, in <module>
    __import__(name,glob,loc,[])
ImportError: No module named ipapi

Edit 2:

./sage -sh
echo $PYTHONPATH

gives me 

/home/boris/its/soft/sft/sage-5.0-x86_64/local/lib/python

What does Your sage gives You in that case?

Sage uses system-wide python...

I've just compiled the latest sage, it tries to import my system-wide ipython instead of its own - and won't run:

./sage
----------------------------------------------------------------------
| Sage Version 5.0, Release Date: 2012-05-14                         |
| Type notebook() for the GUI, and license() for information.        |
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/boris/its/soft/sft/sage-5.0-x86_64/local/bin/sage-ipython", line 18, in <module>
    import IPython
  File "/usr/lib/python2.7/dist-packages/IPython/__init__.py", line 46, in <module>
    from .frontend.terminal.embed import embed
  File "/usr/lib/python2.7/dist-packages/IPython/frontend/terminal/embed.py", line 37, in <module>
    from IPython.frontend.terminal.ipapp import load_default_config
  File "/usr/lib/python2.7/dist-packages/IPython/frontend/terminal/ipapp.py", line 38, in <module>
    from IPython.core.completer import IPCompleter
  File "/usr/lib/python2.7/dist-packages/IPython/core/completer.py", line 84, in <module>
    from IPython.utils import generics
  File "/usr/lib/python2.7/dist-packages/IPython/utils/generics.py", line 19, in <module>
    from IPython.external.simplegeneric import generic
  File "/usr/lib/python2.7/dist-packages/IPython/external/simplegeneric/__init__.py", line 4, in <module>
    from _simplegeneric import *
ImportError: No module named _simplegeneric

Edit:

I purged my ~/.config/ipython as well as ~/.sage. No help. I tried to load sage's ipython manually:

import imp
IPython = imp.imp.load_source('IPython', os.environ['SAGE_ROOT']+'/local/lib/python2.7/site-packages/IPython/__init__.py')

Now it gives another error:

/home/boris/its/soft/sft/sage-5.0-x86_64
Traceback (most recent call last):
  File "/home/boris/its/soft/sft/sage-5.0-x86_64/local/bin/sage-ipython", line 21, in <module>
    IPython = imp.load_source('IPython', os.environ['SAGE_ROOT']+'/local/lib/python2.7/site-packages/IPython/__init__.py')
  File "/home/boris/its/soft/sft/sage-5.0-x86_64/local/lib/python2.7/site-packages/IPython/__init__.py", line 58, in <module>
    __import__(name,glob,loc,[])
ImportError: No module named ipapi

Edit 2:

./sage -sh
echo $PYTHONPATH

gives me 

/home/boris/its/soft/sft/sage-5.0-x86_64/local/lib/python

What does Your sage gives You in that case?

Edit 3:

Here's a list of all of my environment variables (obtained with set -o posix ; set):

BASH=/bin/bash
BASHOPTS=checkwinsize:cmdhist:expand_aliases:extglob:extquote:force_fignore:histappend:interactive_comments:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_COMPLETION=/etc/bash_completion
BASH_COMPLETION_COMPAT_DIR=/etc/bash_completion.d
BASH_COMPLETION_DIR=/etc/bash_completion.d
BASH_LINENO=()
BASH_SOURCE=()
BASH_VERSINFO=([0]="4" [1]="2" [2]="24" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
BASH_VERSION='4.2.24(1)-release'
COLORFGBG='0;15'
COLUMNS=137
COMP_WORDBREAKS='   
"'\''><=;|&(:'
DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-fP3EcB8b5v,guid=e608bfdcea2634dcce5aa08c00000039
DEFAULTS_PATH=/usr/share/gconf/kde-plasma.default.path
DESKTOP_SESSION=kde-plasma
DIRSTACK=()
DISPLAY=:0
DM_CONTROL=/var/run/xdmctl
EUID=1000
GPG_AGENT_INFO=/tmp/gpg-PpUHRE/S.gpg-agent:1495:1
GROUPS=()
GS_LIB=/home/boris/.fonts
GTK2_RC_FILES=/home/boris/.gtkrc-2.0-kde4
GTK_MODULES=canberra-gtk-module:canberra-gtk-module
HISTCONTROL=ignoredups:ignorespace
HISTFILE=/home/boris/.bash_history
HISTFILESIZE=2000
HISTSIZE=1000
HISTTIMEFORMAT='%T '
HOME=/home/boris
HOSTNAME=vasilisa
HOSTTYPE=x86_64
IFS='   
'
KDE_FULL_SESSION=true
KDE_SESSION_UID=1000
KDE_SESSION_VERSION=4
KONSOLE_DBUS_SERVICE=:1.115
KONSOLE_DBUS_SESSION=/Sessions/1
LANG=en_US.UTF-8
LANGUAGE=
LESSCLOSE='/usr/bin/lesspipe %s %s'
LESSOPEN='| /usr/bin/lesspipe %s'
LIBGL_DRIVERS_PATH=/usr/lib/fglrx/dri:/usr/lib32/fglrx/dri
LINES=35
LOGNAME=boris
LS_COLORS='rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:'
MACHTYPE=x86_64-pc-linux-gnu
MAILCHECK=60
MANDATORY_PATH=/usr/share/gconf/kde-plasma.mandatory.path
MANPATH=/home/boris/its/soft/sft/gromacs-4.5.5-double/share/man
OPTERR=1
OPTIND=1
OSTYPE=linux-gnu
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/home/boris/its/soft/bin:/home/boris/.local/lib/python2.7/site-packages/pymol/scripts:/home/boris/its/plts/starts:/home/boris/its/plts/past:/home/boris/its/plts/misc:/home/boris/its/plts/light/templates:/home/boris/its/plts/light:/home/boris/its/plts/goodies:/home/boris/its/plts/dev/pvl:/home/boris/its/plts/dev/dfd:/home/boris/its/plts/dev:/home/boris/its/plts/bio:/home/boris/its/plts
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=4826
PROFILEHOME=/home/boris/its/soft/sft/sage-5.0-x86_64
PS1='\[\e]0;\u@\h: \w\a\]${debian_chroot:+($debian_chroot)}\u@\h:\w\$ '
PS2='> '
PS4='+ '
PWD=/home/boris/its/soft/sft/sage-5.0-x86_64
QT_PLUGIN_PATH=/home/boris/.kde/lib/kde4/plugins/:/usr/lib/kde4/plugins/
SESSION_MANAGER=local/vasilisa:@/tmp/.ICE-unix/1968,unix/vasilisa:/tmp/.ICE-unix/1968
SHELL=/bin/bash
SHELLOPTS=braceexpand:emacs:hashall:histexpand:history:interactive-comments:monitor:posix
SHELL_SESSION_ID=7b343fc0d83b4000b2f39725cf0c34c7
SHLVL=3
SSH_AGENT_PID=1494
SSH_AUTH_SOCK=/tmp/ssh-JccCowCj1421/agent.1421
TERM=xterm
UBUNTU_MENUPROXY=libappmenu.so
UID=1000
USER=boris
WINDOWID=94371858
WINDOWPATH=7
XCURSOR_THEME=oxy-white
XDG_CONFIG_DIRS=/etc/xdg/xdg-kde-plasma:/etc/xdg
XDG_DATA_DIRS=/usr/share/kde-plasma:/usr/local/share/:/usr/share/
XDG_SESSION_COOKIE=b3f834ca3985f055b3fc58a200000291-1338101378.134988-1326071978
XDM_MANAGED=method=classic,auto
_=posix
__git_all_commands=
__git_diff_common_options='--stat --numstat --shortstat --summary
                        --patch-with-stat --name-only --name-status --color
                        --no-color --color-words --no-renames --check
                        --full-index --binary --abbrev --diff-filter=
                        --find-copies-harder
                        --text --ignore-space-at-eol --ignore-space-change
                        --ignore-all-space --exit-code --quiet --ext-diff
                        --no-ext-diff
                        --no-prefix --src-prefix= --dst-prefix=
                        --inter-hunk-context=
                        --patience
                        --raw
                        --dirstat --dirstat= --dirstat-by-file
                        --dirstat-by-file= --cumulative
'
__git_fetch_options='
        --quiet --verbose --append --upload-pack --force --keep --depth=
        --tags --no-tags --all --prune --dry-run
'
__git_log_common_options='
        --not --all
        --branches --tags --remotes
        --first-parent --merges --no-merges
        --max-count=
        --max-age= --since= --after=
        --min-age= --until= --before=
        --min-parents= --max-parents=
        --no-min-parents --no-max-parents
'
__git_log_date_formats='relative iso8601 rfc2822 short local default raw'
__git_log_gitk_options='
        --dense --sparse --full-history
        --simplify-merges --simplify-by-decoration
        --left-right --notes --no-notes
'
__git_log_pretty_formats='oneline short medium full fuller email raw format:'
__git_log_shortlog_options='
        --author= --committer= --grep=
        --all-match
'
__git_merge_options='
        --no-commit --no-stat --log --no-log --squash --strategy
        --commit --stat --no-squash --ff --no-ff --ff-only --edit --no-edit
'
__git_merge_strategies=
__git_mergetools_common='diffuse ecmerge emerge kdiff3 meld opendiff
                        tkdiff vimdiff gvimdiff xxdiff araxis p4merge bc3
'
__git_porcelain_commands=
__git_send_email_confirm_options='always never auto cc compose'
__git_send_email_suppresscc_options='author self cc bodycc sob cccmd body all'
__git_whitespacelist='nowarn warn error error-all fix'
__grub_script_check_program=grub-script-check
_scp_path_esc='[][(){}<>",:;^&!$=?`|\\'\''[:space:]]'
_stg_commands='branch clean clone commit delete diff edit export files float fold goto hide id import init log mail new next patches pick pop prev publish pull push rebase redo refresh rename repair reset series show sink squash status sync top uncommit undo unhide'
python=/usr/share/man/man1/python.1.gz
python_interpreters='/usr/bin/python2.7-dbg /usr/bin/python3.2 /usr/bin/python /usr/bin/python2.6 /usr/bin/python2.7 /usr/bin/python3.2mu /usr/bin/python2.7-dbg-config /usr/bin/python2.7-config /etc/python3.2 /etc/python /etc/python2.6 /etc/python2.7 /usr/lib/python3.2 /usr/lib/python2.6 /usr/lib/python2.7 /usr/bin/X11/python2.7-dbg /usr/bin/X11/python3.2 /usr/bin/X11/python /usr/bin/X11/python2.6 /usr/bin/X11/python2.7 /usr/bin/X11/python3.2mu /usr/bin/X11/python2.7-dbg-config /usr/bin/X11/python2.7-config /usr/local/lib/python3.2 /usr/local/lib/python2.6 /usr/local/lib/python2.7 /usr/include/python2.7_d /usr/include/python2.6 /usr/include/python2.7 /usr/include/python3.2mu /usr/share/python /usr/share/man/man1/python.1.gz'
pythons='python python.1.gz python2.6 python2.7 python2.7-config python2.7_d python2.7-dbg python2.7-dbg-config python3.2 python3.2mu '
scriptsDir=/home/boris/its/plts
subdir=/home/boris/its/plts

Can You see anything wrong in it?

click to hide/show revision 5
retagged

updated 2015-01-13 20:47:00 +0100

FrédéricC gravatar image

Sage uses system-wide python...

I've just compiled the latest sage, it tries to import my system-wide ipython instead of its own - and won't run:

./sage
----------------------------------------------------------------------
| Sage Version 5.0, Release Date: 2012-05-14                         |
| Type notebook() for the GUI, and license() for information.        |
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/boris/its/soft/sft/sage-5.0-x86_64/local/bin/sage-ipython", line 18, in <module>
    import IPython
  File "/usr/lib/python2.7/dist-packages/IPython/__init__.py", line 46, in <module>
    from .frontend.terminal.embed import embed
  File "/usr/lib/python2.7/dist-packages/IPython/frontend/terminal/embed.py", line 37, in <module>
    from IPython.frontend.terminal.ipapp import load_default_config
  File "/usr/lib/python2.7/dist-packages/IPython/frontend/terminal/ipapp.py", line 38, in <module>
    from IPython.core.completer import IPCompleter
  File "/usr/lib/python2.7/dist-packages/IPython/core/completer.py", line 84, in <module>
    from IPython.utils import generics
  File "/usr/lib/python2.7/dist-packages/IPython/utils/generics.py", line 19, in <module>
    from IPython.external.simplegeneric import generic
  File "/usr/lib/python2.7/dist-packages/IPython/external/simplegeneric/__init__.py", line 4, in <module>
    from _simplegeneric import *
ImportError: No module named _simplegeneric

Edit:

I purged my ~/.config/ipython as well as ~/.sage. No help. I tried to load sage's ipython manually:

import imp
IPython = imp.imp.load_source('IPython', os.environ['SAGE_ROOT']+'/local/lib/python2.7/site-packages/IPython/__init__.py')

Now it gives another error:

/home/boris/its/soft/sft/sage-5.0-x86_64
Traceback (most recent call last):
  File "/home/boris/its/soft/sft/sage-5.0-x86_64/local/bin/sage-ipython", line 21, in <module>
    IPython = imp.load_source('IPython', os.environ['SAGE_ROOT']+'/local/lib/python2.7/site-packages/IPython/__init__.py')
  File "/home/boris/its/soft/sft/sage-5.0-x86_64/local/lib/python2.7/site-packages/IPython/__init__.py", line 58, in <module>
    __import__(name,glob,loc,[])
ImportError: No module named ipapi

Edit 2:

./sage -sh
echo $PYTHONPATH

gives me 

/home/boris/its/soft/sft/sage-5.0-x86_64/local/lib/python

What does Your sage gives You in that case?

Edit 3:

Here's a list of all of my environment variables (obtained with set -o posix ; set):

BASH=/bin/bash
BASHOPTS=checkwinsize:cmdhist:expand_aliases:extglob:extquote:force_fignore:histappend:interactive_comments:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_COMPLETION=/etc/bash_completion
BASH_COMPLETION_COMPAT_DIR=/etc/bash_completion.d
BASH_COMPLETION_DIR=/etc/bash_completion.d
BASH_LINENO=()
BASH_SOURCE=()
BASH_VERSINFO=([0]="4" [1]="2" [2]="24" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
BASH_VERSION='4.2.24(1)-release'
COLORFGBG='0;15'
COLUMNS=137
COMP_WORDBREAKS='   
"'\''><=;|&(:'
DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-fP3EcB8b5v,guid=e608bfdcea2634dcce5aa08c00000039
DEFAULTS_PATH=/usr/share/gconf/kde-plasma.default.path
DESKTOP_SESSION=kde-plasma
DIRSTACK=()
DISPLAY=:0
DM_CONTROL=/var/run/xdmctl
EUID=1000
GPG_AGENT_INFO=/tmp/gpg-PpUHRE/S.gpg-agent:1495:1
GROUPS=()
GS_LIB=/home/boris/.fonts
GTK2_RC_FILES=/home/boris/.gtkrc-2.0-kde4
GTK_MODULES=canberra-gtk-module:canberra-gtk-module
HISTCONTROL=ignoredups:ignorespace
HISTFILE=/home/boris/.bash_history
HISTFILESIZE=2000
HISTSIZE=1000
HISTTIMEFORMAT='%T '
HOME=/home/boris
HOSTNAME=vasilisa
HOSTTYPE=x86_64
IFS='   
'
KDE_FULL_SESSION=true
KDE_SESSION_UID=1000
KDE_SESSION_VERSION=4
KONSOLE_DBUS_SERVICE=:1.115
KONSOLE_DBUS_SESSION=/Sessions/1
LANG=en_US.UTF-8
LANGUAGE=
LESSCLOSE='/usr/bin/lesspipe %s %s'
LESSOPEN='| /usr/bin/lesspipe %s'
LIBGL_DRIVERS_PATH=/usr/lib/fglrx/dri:/usr/lib32/fglrx/dri
LINES=35
LOGNAME=boris
LS_COLORS='rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:'
MACHTYPE=x86_64-pc-linux-gnu
MAILCHECK=60
MANDATORY_PATH=/usr/share/gconf/kde-plasma.mandatory.path
MANPATH=/home/boris/its/soft/sft/gromacs-4.5.5-double/share/man
OPTERR=1
OPTIND=1
OSTYPE=linux-gnu
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/home/boris/its/soft/bin:/home/boris/.local/lib/python2.7/site-packages/pymol/scripts:/home/boris/its/plts/starts:/home/boris/its/plts/past:/home/boris/its/plts/misc:/home/boris/its/plts/light/templates:/home/boris/its/plts/light:/home/boris/its/plts/goodies:/home/boris/its/plts/dev/pvl:/home/boris/its/plts/dev/dfd:/home/boris/its/plts/dev:/home/boris/its/plts/bio:/home/boris/its/plts
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=4826
PROFILEHOME=/home/boris/its/soft/sft/sage-5.0-x86_64
PS1='\[\e]0;\u@\h: \w\a\]${debian_chroot:+($debian_chroot)}\u@\h:\w\$ '
PS2='> '
PS4='+ '
PWD=/home/boris/its/soft/sft/sage-5.0-x86_64
QT_PLUGIN_PATH=/home/boris/.kde/lib/kde4/plugins/:/usr/lib/kde4/plugins/
SESSION_MANAGER=local/vasilisa:@/tmp/.ICE-unix/1968,unix/vasilisa:/tmp/.ICE-unix/1968
SHELL=/bin/bash
SHELLOPTS=braceexpand:emacs:hashall:histexpand:history:interactive-comments:monitor:posix
SHELL_SESSION_ID=7b343fc0d83b4000b2f39725cf0c34c7
SHLVL=3
SSH_AGENT_PID=1494
SSH_AUTH_SOCK=/tmp/ssh-JccCowCj1421/agent.1421
TERM=xterm
UBUNTU_MENUPROXY=libappmenu.so
UID=1000
USER=boris
WINDOWID=94371858
WINDOWPATH=7
XCURSOR_THEME=oxy-white
XDG_CONFIG_DIRS=/etc/xdg/xdg-kde-plasma:/etc/xdg
XDG_DATA_DIRS=/usr/share/kde-plasma:/usr/local/share/:/usr/share/
XDG_SESSION_COOKIE=b3f834ca3985f055b3fc58a200000291-1338101378.134988-1326071978
XDM_MANAGED=method=classic,auto
_=posix
__git_all_commands=
__git_diff_common_options='--stat --numstat --shortstat --summary
                        --patch-with-stat --name-only --name-status --color
                        --no-color --color-words --no-renames --check
                        --full-index --binary --abbrev --diff-filter=
                        --find-copies-harder
                        --text --ignore-space-at-eol --ignore-space-change
                        --ignore-all-space --exit-code --quiet --ext-diff
                        --no-ext-diff
                        --no-prefix --src-prefix= --dst-prefix=
                        --inter-hunk-context=
                        --patience
                        --raw
                        --dirstat --dirstat= --dirstat-by-file
                        --dirstat-by-file= --cumulative
'
__git_fetch_options='
        --quiet --verbose --append --upload-pack --force --keep --depth=
        --tags --no-tags --all --prune --dry-run
'
__git_log_common_options='
        --not --all
        --branches --tags --remotes
        --first-parent --merges --no-merges
        --max-count=
        --max-age= --since= --after=
        --min-age= --until= --before=
        --min-parents= --max-parents=
        --no-min-parents --no-max-parents
'
__git_log_date_formats='relative iso8601 rfc2822 short local default raw'
__git_log_gitk_options='
        --dense --sparse --full-history
        --simplify-merges --simplify-by-decoration
        --left-right --notes --no-notes
'
__git_log_pretty_formats='oneline short medium full fuller email raw format:'
__git_log_shortlog_options='
        --author= --committer= --grep=
        --all-match
'
__git_merge_options='
        --no-commit --no-stat --log --no-log --squash --strategy
        --commit --stat --no-squash --ff --no-ff --ff-only --edit --no-edit
'
__git_merge_strategies=
__git_mergetools_common='diffuse ecmerge emerge kdiff3 meld opendiff
                        tkdiff vimdiff gvimdiff xxdiff araxis p4merge bc3
'
__git_porcelain_commands=
__git_send_email_confirm_options='always never auto cc compose'
__git_send_email_suppresscc_options='author self cc bodycc sob cccmd body all'
__git_whitespacelist='nowarn warn error error-all fix'
__grub_script_check_program=grub-script-check
_scp_path_esc='[][(){}<>",:;^&!$=?`|\\'\''[:space:]]'
_stg_commands='branch clean clone commit delete diff edit export files float fold goto hide id import init log mail new next patches pick pop prev publish pull push rebase redo refresh rename repair reset series show sink squash status sync top uncommit undo unhide'
python=/usr/share/man/man1/python.1.gz
python_interpreters='/usr/bin/python2.7-dbg /usr/bin/python3.2 /usr/bin/python /usr/bin/python2.6 /usr/bin/python2.7 /usr/bin/python3.2mu /usr/bin/python2.7-dbg-config /usr/bin/python2.7-config /etc/python3.2 /etc/python /etc/python2.6 /etc/python2.7 /usr/lib/python3.2 /usr/lib/python2.6 /usr/lib/python2.7 /usr/bin/X11/python2.7-dbg /usr/bin/X11/python3.2 /usr/bin/X11/python /usr/bin/X11/python2.6 /usr/bin/X11/python2.7 /usr/bin/X11/python3.2mu /usr/bin/X11/python2.7-dbg-config /usr/bin/X11/python2.7-config /usr/local/lib/python3.2 /usr/local/lib/python2.6 /usr/local/lib/python2.7 /usr/include/python2.7_d /usr/include/python2.6 /usr/include/python2.7 /usr/include/python3.2mu /usr/share/python /usr/share/man/man1/python.1.gz'
pythons='python python.1.gz python2.6 python2.7 python2.7-config python2.7_d python2.7-dbg python2.7-dbg-config python3.2 python3.2mu '
scriptsDir=/home/boris/its/plts
subdir=/home/boris/its/plts

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