Cannot build 9.7 on Debian Sid

asked 2023-01-09 18:52:33 +0100

lrfinotti gravatar image

updated 2023-01-09 18:54:05 +0100

My working installation of Sage 9-7 (built from source) on Debian Sid stopped working. I thought it was due to the recent transition to Python 3.11 (or some other change in Sid). So, I tried to build it again from source, but it fails.

Here is the last messages before it stops:

[sagelib-9.7]     error: Command "gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wno-unused -g -O2 -g -O2 -fPIC -Isage/cpython -I/usr/include/x86_64-linux-gnu/singular -I/usr/include/x86_64-linux-gnu/singular/singular -I/usr/include/singular -I/usr/include/singular/singular -I/home/finotti/src/sage-9.7/local/var/lib/sage/venv-python3.10.5/lib/python3.10/site-packages/cypari2 -Isage/libs/ntl -Isage/rings/finite_rings -I/home/finotti/src/sage-9.7/local/var/lib/sage/venv-python3.10.5/lib/python3.10/site-packages/cysignals -I/home/finotti/src/sage-9.7/src -I/home/finotti/src/sage-9.7/local/var/lib/sage/venv-python3.10.5/lib/python3.10/site-packages/numpy/core/include -I/home/finotti/src/sage-9.7/local/var/lib/sage/venv-python3.10.5/include/python3.10 -I/home/finotti/src/sage-9.7/local/var/lib/sage/venv-python3.10.5/include/python3.10 -c sage/rings/polynomial/multi_polynomial_libsingular.cpp -o build/temp.linux-x86_64-cpython-310/sage/rings/polynomial/multi_polynomial_libsingular.o -std=c++11 -fabi-version=6" failed with exit status 1
[sagelib-9.7]     error: subprocess-exited-with-error
[sagelib-9.7]     × python develop did not run successfully.
[sagelib-9.7]     │ exit code: 1
[sagelib-9.7]     ╰─> See above for output.
[sagelib-9.7]     note: This error originates from a subprocess, and is likely not a problem with pip.
[sagelib-9.7]     full command: /home/finotti/src/sage-9.7/local/var/lib/sage/venv-python3.10.5/bin/python3 -c '
[sagelib-9.7]     exec(compile('"'"''"'"''"'"'
[sagelib-9.7]     # This is <pip-setuptools-caller> -- a caller that pip uses to run
[sagelib-9.7]     #
[sagelib-9.7]     # - It imports setuptools before invoking, to enable projects that directly
[sagelib-9.7]     #   import from `distutils.core` to work with newer packaging standards.
[sagelib-9.7]     # - It provides a clear error message when setuptools is not installed.
[sagelib-9.7]     # - It sets `sys.argv[0]` to the underlying ``, when invoking `` so
[sagelib-9.7]     #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
[sagelib-9.7]     #     manifest_maker: standard file '"'"'-c'"'"' not found".
[sagelib-9.7]     # - It generates a shim, for handling setup.cfg-only projects.
[sagelib-9.7]     import os, sys, tokenize
[sagelib-9.7]     try:
[sagelib-9.7]         import setuptools
[sagelib-9.7]     except ImportError as error:
[sagelib-9.7]         print(
[sagelib-9.7]             "ERROR: Can not execute `` since setuptools is not available in "
[sagelib-9.7]             "the build environment.",
[sagelib-9.7]             file=sys.stderr,
[sagelib-9.7]         )
[sagelib-9.7]         sys.exit(1)
[sagelib-9.7]     __file__ = %r
[sagelib-9.7]     sys.argv[0] = __file__
[sagelib-9.7]     if os.path.exists(__file__):
[sagelib-9.7]         filename = __file__
[sagelib-9.7]         with as f:
[sagelib-9.7]             setup_py_code =
[sagelib-9.7]     else:
[sagelib-9.7]         filename = "<auto-generated setuptools caller>"
[sagelib-9.7]         setup_py_code = "from setuptools import setup; setup()"
[sagelib-9.7]     exec(compile(setup_py_code, filename, "exec"))
[sagelib-9.7]     '"'"''"'"''"'"' % ('"'"'/home/finotti/src/sage-9.7/src/'"'"',), "<pip-setuptools-caller>", "exec"))' --no-user-cfg develop --no-deps
[sagelib-9.7]     cwd: /home/finotti/src/sage-9.7/src/
[sagelib-9.7] error: subprocess-exited-with-error
[sagelib-9.7] × python develop did not run successfully.
[sagelib-9.7] │ exit code: 1
[sagelib-9.7] ╰─> See above for output.
[sagelib-9.7] note: This error originates from a subprocess, and is likely not a problem with pip.
[sagelib-9.7] real      12m29.646s
[sagelib-9.7] user      46m59.670s
[sagelib-9.7] sys       1m23.295s
make[4]: *** [Makefile:3115: sagelib-SAGE_VENV-no-deps] Error 1
make[3]: *** [Makefile:3115: /home/finotti/src/sage-9.7/local/var/lib/sage/venv-python3.10.5/var/lib/sage/installed/sagelib-9.7] Error 2
make[2]: *** [Makefile:2647: all-start] Error 2
make[2]: Leaving directory '/home/finotti/src/sage-9.7/build/make'

real    26m21.018s
user    126m3.920s
sys     6m28.588s
Error building Sage.

The following package(s) may have failed to build (not necessarily
during this run of 'make all-start'):

It is safe to delete any log files and build directories, but they
contain information that is helpful for debugging build problems.
WARNING: If you now run 'make' again, the build directory of the
same version of the package will, by default, be deleted. Set the
environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this.

make[1]: *** [Makefile:40: all-start] Error 1
make[1]: Leaving directory '/home/finotti/src/sage-9.7'
make: *** [Makefile:13: all] Error 2

The install.log file is here:

(I tried asking in, but I keep getting "Error posting message" for some reason.)

More info on the machine:

  Host: finottidell5060 Kernel: 6.1.0-3.slh.1-aptosid-amd64 arch: x86_64
    bits: 64 compiler: gcc v: 12.2.0 Desktop: KDE Plasma v: 5.26.5
    Distro: aptosid 2013-01 - kde-full - (201305050307) base: Debian
    GNU/Linux bookworm/sid
  Type: Desktop System: Dell product: OptiPlex 5060 v: N/A
    serial: <superuser required>
  Mobo: Dell model: 0J8G6F v: A02 serial: <superuser required> UEFI: Dell
    v: 1.20.0 date: 05/19/2022
  Device-1: hidpp_battery_0 model: Logitech Wireless Mouse MX Master 3
    charge: 50% (should be ignored) status: full
  Info: 6-core model: Intel Core i7-8700 bits: 64 type: MT MCP
    arch: Coffee Lake rev: A cache: L1: 384 KiB L2: 1.5 MiB L3: 12 MiB
  Speed (MHz): avg: 1000 high: 3200 min/max: 800/4600 cores: 1: 800 2: 800
    3: 800 4: 800 5: 801 6: 3200 7: 800 8: 800 9: 800 10: 800 11: 800 12: 800
    bogomips: 76799
  Flags: avx avx2 ht lm nx pae sse sse2 sse3 sse4_1 sse4_2 ssse3 vmx
  Device-1: Intel CoffeeLake-S GT2 [UHD Graphics 630] vendor: Dell
    driver: i915 v: kernel arch: Gen-9.5 bus-ID: 00:02.0
  Device-2: Logitech Webcam C270 type: USB driver: snd-usb-audio,uvcvideo
    bus-ID: 1-7.4.1:10
  Display: x11 server: X.Org v: driver: X: loaded: modesetting
    unloaded: fbdev,vesa dri: iris gpu: i915 resolution: 1: 1920x1200~60Hz
    2: 1080x1920~60Hz
  API: OpenGL v: 4.6 Mesa 22.3.2 renderer: Mesa Intel UHD Graphics 630 (CFL
    GT2) direct render: Yes
  Device-1: Intel Ethernet I219-V vendor: Dell driver: e1000e v: kernel
    port: N/A bus-ID: 00:1f.6
  IF: eno1 state: up speed: 100 Mbps duplex: full mac: 8c:ec:4b:b1:7e:34
  Local Storage: total: 953.88 GiB used: 721.37 GiB (75.6%)
  Processes: 417 Uptime: 3h 7m Memory: 46.75 GiB used: 8.53 GiB (18.3%)
  Init: systemd target: graphical (5) Compilers: gcc: 12.2.0 Packages: 6177
  Shell: Bash v: 5.2.15 inxi: 3.3.24

Any help would be greatly appreciated.

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