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compile error building sagemath 8.4 beta7 on Linux Manjaro

asked 2018-10-13 21:57:29 -0500

Nasser gravatar image

updated 2018-10-14 05:34:55 -0500

tmonteil gravatar image

I've run Arch Linux package manager to install sagemath many times before on Linux Manjaro and it never failed to compile before. This is the first time I've seen a compile error. This seems like a packaging issue?

Using

>uname -a
Linux me-pc 4.14.74-1-MANJARO 

>cat /etc/*release
Manjaro Linux
DISTRIB_ID=ManjaroLinux
DISTRIB_RELEASE=18.0.0-rc
DISTRIB_CODENAME=Illyria

I select sagemath from AUR using the package manager, click install. I fail with this error

Building sagemath-git...
Cloning into 'sagemath-git'...
==> Making package: sagemath-git 8.4.beta7.r0.ga1bfef8cf3-1 (Sat 13 Oct 2018 08:04:38 PM CDT)
==> Checking runtime dependencies...
==> Checking buildtime dependencies...
==> Retrieving sources...
  -> Cloning sage git repo...
....
gcc -DNDEBUG -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/site-packages/cysignals -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include -I/home/me/TMP/sagemath-git/src/sage/src -I/home/me/TMP/sagemath-git/src/sage/src/sage/ext -Ibuild/cythonized -I/usr/include/python2.7 -c build/cythonized/sage/calculus/integration.c -o build/temp.linux-x86_64-2.7/build/cythonized/sage/calculus/integration.o -fno-strict-aliasing -DCYTHON_CLINE_IN_TRACEBACK=1 -DGSL_DISABLE_DEPRECATED -std=c99
build/cythonized/sage/calculus/integration.c:609:10: fatal error: gsl/gsl_cblas.h: No such file or directory
 #include "gsl/gsl_cblas.h"
          ^~~~~~~~~~~~~~~~~
compilation terminated.
error: command 'gcc' failed with exit status 1
[ 15/499] gcc -DNDEBUG -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/site-packages/cysignals -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include -I/home/me/TMP/sagemath-git/src/sage/src -I/home/me/TMP/sagemath-git/src/sage/src/sage/ext -Ibuild/cythonized -I/usr/include/python2.7 -c build/cythonized/sage/calculus/interpolation.c -o build/temp.linux-x86_64-2.7/build/cythonized/sage/calculus/interpolation.o -fno-strict-aliasing -DCYTHON_CLINE_IN_TRACEBACK=1 -std=c99
build/cythonized/sage/calculus/interpolation.c:603:10: fatal error: gsl/gsl_interp.h: No such file or directory
 #include "gsl/gsl_interp.h"
          ^~~~~~~~~~~~~~~~~~
compilation terminated.

I've put the complete build log file here https://www.12000.org/tmp/10132018/sage_build_log.txt (this form will not let me attach a plain text file).

I install the Linux system new, and was trying to install sagemath on it.

Posting this here in case someone wants to have a look to see why it failed to compile. It seems to be missing some prerequisites.

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answered 2018-10-15 04:16:04 -0500

arojas gravatar image

You're missing the gsl package. This used to be pulled in via pynac -> libgiac, but since the libgiac dependency was removed due to https://ask.sagemath.org/question/43839 this is no longer the case. You should install libgiac manually for now, will fix the dependencies for next release

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Asked: 2018-10-13 21:57:29 -0500

Seen: 42 times

Last updated: Oct 15