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Well, I ran sagemath on my desktop computer after disbling the IceTea plugin and now jmol works perfectly just like it is sypposed to. The desktop is 32bit and the laptop, which still has issues is 64bit. I wonder if that has anything to do with it? Why should the laptop work partially (using Chromium) and not FireFox? both the laptop and the desktop are using the same version of Java plugin and the same version of Linux other than 32/64 bit. Hmmmmmmm.....

For those reporting issues with Firefox, please remember to disble the IceTea plugin and enable the Java plugin!