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Oh, I solved it.

I have latest numpy, scipy, matplotlib installed at

~/.local/lib/python2.7/site-packages

and it makes sage crazy - both during compilation and during the usage.

So renaming that lib directory to lib~ allows one to use sage. Here's a bash function which toggles reanming of lib:

bk-tgls-lcl-lib () { if [ -e ~/.local/lib ]; then mv ~/.local/lib ~/.local/lib~ && echo '!!! Now it is lib~'; else mv ~/.local/lib~ ~/.local/lib && echo '!!! Now it is lib'; fi; }