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You can find Cython under the site-packages/ directory of the version of Python that is shipped with Sage. For example:

[mvngu@sage sage-4.5.3.alpha2]$ ls local/lib/python/site-packages/Cython
CodeWriter.py   Debugging.pyc  __init__.pyc  Shadow.pyc        TestUtils.py
CodeWriter.pyc  Distutils      Plex          StringIOTree.py   TestUtils.pyc
Compiler        Includes       Runtime       StringIOTree.pyc  Utils.py
Debugging.py    __init__.py    Shadow.py     Tests             Utils.pyc