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Dicom files with sage

asked 2017-06-26 10:10:38 -0600

cdd gravatar image

Hi everybody! Please is there a way to manage DICOM files with sage? This is possible with pure python, using pydicom. How to use this tool under sage?

Thank you in advance.

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answered 2017-06-26 12:01:34 -0600

tmonteil gravatar image

updated 2017-06-26 12:02:55 -0600

You shouold be able to install pydicom within Sage as follow. From the command line located in your Sage installation directory, just type:

./sage -pip install pydicom

Then start Sage and try to import it the usual way.

Do not hesitate to report your experience.

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Thank for that answer. I want to specify that I'm on Windows. I'm working with sage on virtualbox.

when i try to type what you asked, I have somethink like this:

Traceback (most recent call last): File "<stdin>", line 1, in <module> File "_sage_input_5.py", line 10, in <module> exec compile(u'open("___code___.py","w").write("# -- coding: utf-8 --\n" + _support_.preparse_worksheet_cell(base64.b64decode("LXBpcCBpbnN0YWxsIHB5ZGljb20="),globals())+"\n"); execfile(os.path.abspath("___code___.py")) File "", line 1, in <module>

File "/tmp/tmpMES0gZ/___code___.py", line 2 -pip install pydicom ^ SyntaxError: invalid syntax

cdd gravatar imagecdd ( 2017-06-28 11:10:50 -0600 )edit

You have to type this from a shell, not from a Sage session, see https://wiki.sagemath.org/SageApplian...

tmonteil gravatar imagetmonteil ( 2017-06-30 04:38:38 -0600 )edit

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Asked: 2017-06-26 10:10:38 -0600

Seen: 62 times

Last updated: Jun 26