PIP Install Fail 6.5

asked 2015-03-08 19:00:10 -0500

jahmul14 gravatar image

updated 2015-10-22 14:38:43 -0500

FrédéricC gravatar image

I download sage-6.5-x86_64-Darwin-OSX_10.7_x86_64-app.dmg. Everything seemed fine, but I tried to using ./sage pip install pandas and got the following error:

error: command 'gcc' failed with exit status 1

----------------------------------------
Cleaning up...
Command /Applications/sage-6.5.app/contents/resources/sage/local/bin/python -c "import setuptools, tokenize;__file__='/private/var/folders/q5/mcrwfjqj7_l3gjlqtx02d2g40000gn/T/pip_build_eh/pandas/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/q5/mcrwfjqj7_l3gjlqtx02d2g40000gn/T/pip-678ua0-record/install-record.txt --single-version-externally-managed --compile failed with error code 1 in /private/var/folders/q5/mcrwfjqj7_l3gjlqtx02d2g40000gn/T/pip_build_eh/pandas

I also tried ./sage --sh followed by pip install pandas and received the same error.
A somewhat similar question is listed here: http://ask.sagemath.org/question/1097...

I used what was listed there, but have been unable to figure out how to solve this issue.

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Comments

Do you in fact have a compiler and/or the developer command line tools installed? You will need those to compile stuff. If you do, then perhaps the binary is attempting to use the gcc it was built with (the gcc Sage includes) rather than the Apple clang compiler. Try doing ./sage --sh followed by which gcc and that may give some useful information to further help debug this.

kcrisman gravatar imagekcrisman ( 2015-03-09 00:52:58 -0500 )edit

I do have command line tools installed and it is Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 Apple LLVM version 6.0 (clang-600.0.57) (based on LLVM 3.5svn) Target: x86_64-apple-darwin14.1.0 Thread model: posix

When I do ./sage --sh followed by which gcc i get /Applications/sage-6.5.app/contents/resources/sage/local/libexec/ccache/gcc, which seems to be the issue. How would I get the binary to use the Apple clang compiler?

jahmul14 gravatar imagejahmul14 ( 2015-03-10 21:00:04 -0500 )edit