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Jmol applet in Sage 6.3 cannot load

asked 2015-01-01 23:56:49 -0500

ikol gravatar image

updated 2015-01-02 06:59:10 -0500


I am going trough the Tutorial using Notebook. Under 3D plotting, I am trying to run the first example. The static 3D plot is generated but when I click "Make it Interactive", the Jmol applet fails to load. The error message says JmolApplet#0 has trouble loading, will try again. However, it fails loading. This is the Sage screen output I get:

java version "1.7.0_65"
OpenJDK Runtime Environment (IcedTea 2.5.3) (7u71-2.5.3-0ubuntu0.14.04.1)
OpenJDK 64-Bit Server VM (build 24.65-b04, mixed mode)
This application does not specify a Codebase in its manifest. Please verify with the applet's vendor. Continuing. See: for details.
Application title was not found in manifest. Check with application vendor
Application title was not found in manifest. Check with application vendor
script ERROR: script ERROR: io error reading http://localhost:8080/home/_sage_/30/cells/14/cells/14/|SCRIPT: http://localhost:8080/home/_sage_/30/cells/14/cells/14/

I have Open JDK 7 and IcedTea installed on Ubuntu 14.04 (64-bit). If I go to the Jmol website, I can run their demo and the Jmol applet IcedTea loads just fine in Firefox, it only doesn't work in the Sage Notebook.

Thanks for your help,


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answered 2015-01-02 07:26:36 -0500

how about the latest stable version of Sage, 6.4.1?

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Thanks, Dima for your comment. Version 6.4.1 works fine with Jmol.

ikol gravatar imageikol ( 2015-01-03 11:56:35 -0500 )edit

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Asked: 2015-01-01 23:56:49 -0500

Seen: 321 times

Last updated: Jan 03 '15