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I've been wrestling with this ever since 10.14, "Mojave" came out. I gave an answer to this question, sagemath 8.6 could not work normally on mac 10.14.3 with my own workaround, but your suggestion, SageMath.app/Contents/MacOS/Sage, seems to work just fine for me and is easier to do. I have just now written a shell script, made it executable with chmod a+x and put it in the dock, so that is a big improvement!

As I said in my previous answer, I have mentioned this before in the sage-devel forum. I will raise the matter there again if 8.7 doesn't clear it up, and your workaround would seem to point to a very easy solution to this problem.