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If the commands run inside your big loop are independent, you can run them independently using the @parallel decorator. You will have to run the commands of your loop as a function, and replace the print statements by some return statements. Indeed, thing printed in a subprocess will not be visible.
See:
- http://doc.sagemath.org/html/en/reference/parallel/sage/parallel/decorate.html
- http://doc.sagemath.org/html/en/reference/parallel/index.html
