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It seems like something in Sage broke your C compiler. What was the last package to install successfully before FLINT failed (see logs/install.log for that)?
From the Sage root directory, what is the output of
$ ./sage --sh
(sage-sh) ldd /opt/gnu/packages/gcc-4.8.2/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.8.2/cc1
