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Thanks to the precise indication by ppurka I have been able to completely solve the problem. If someone working on Linux find similar problems, here I found a detailed guide for the (not so simple) task to install Oracle Java jdk and jre in Ubuntu (I actually use Mint, but the guide has worked well the same):

http://www.wikihow.com/Install-Oracle-Java-on-Ubuntu-Linux

After installing Oracle Java and activacting it in Firefox, now the Jmol viewer works flawlessly, also with the advanced controls.

Hope this can be useful to somebody. Thanks again to ppurka.

Thanks to the precise indication by ppurka I have been able to completely solve the problem. If someone working on Linux find finds similar problems, here I found there is a detailed guide for the (not so simple) task to install Oracle Java jdk and jre in Ubuntu (I actually use Mint, but the guide has worked well the same):

http://www.wikihow.com/Install-Oracle-Java-on-Ubuntu-Linux

After installing Oracle Java and activacting it in Firefox, now the Jmol viewer works flawlessly, also with the advanced controls.

Hope this can be useful to somebody. Thanks again to ppurka.