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Hi all

I found a workaround for my problem. I exported all the JMol plot3d images and then copied and pasted them into the same worksheet as jpegs. I then removed all the output from the worksheet leaving the Sage plotting commands and the jpegs. Now when I print and save the output as a PDF all the plots become part of the PDF.

Note: Pasting the images does not seem to work with a recent version of Firefox but does work with Safari.

Perhaps there is away to automatically change all the JMol 3d plots to jpegs in place. It certainly would be a nice feature.

Thanks for the info about other ways to generate 3D plots.