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A good installation of sage should have no errors, but this problem has come up for me too :(

If you add information about your system, perhaps someone here can help you. If not, you could try re-posting your question (with system details) on the sage-devel list.

In the meantime, if sage is working you can still continue development and test sage on the subset of files you think will be affected by your changes--this makes keeping track of new doctest failures a little easier. Of course you will need to test all of sage eventually, but you don't have to just do noting until this gets resolved :)